Software
Imaris
Imaris
- For visualisation of 3D confocal data (or tiff series)
- Visualisation of time series (4D)
- Surpass modul: for volume and surface rendering, object quantification, object measurement
- Colocalisation modul
Contact: Prof. Dr. Shida Yousefi, Dr. Fabian Blank
Huygens essentials
Huygens essentials
(Scientific Volume Imaging, Netherlands)
- Deconvolution software for microscopic images (confocal, widefield)
- PSF distiller software included
Contact: Prof. Dr. Shida Yousefi
Huygens Remote Manager (HRM)
Huygens Remote Manager (HRM)
(Scientific Volume Imaging, Netherlands)
- Web-based batch deconvolution for all types of microscopic images
- Server with GPU acceleration
- Access online (university network only!)
Contact: Dr. Yury Belyaev
ImageJ
ImageJ
(National institutes of Health)
OpenSource software (help can be provided)
- Visualization of Data (8, 16, 32 bit data/ TIFF, PNG, GIF, DICOM, LSM, FITS,MRC, …)
- Cross platform (compatible with Windows (XP, Vista & 7), Mac Os X, Linux)
- Extendible (e.g. stereology, Cell counter, deconvolution, FFT, hyperstacks, …)
Contact: Dr. Dimitri Vanhecke
Imod
Imod
(Boulder Laboratory for 3-D Electron Microscopy of Cells)
- image processing, modeling and display of TEM serial sections and optical sections
- tomographic reconstruction and 3D reconstruction
Contact: Dr. Dimitri Vanhecke
STEPanizer
UCSF Chimera
UCSF Chimera
- Protein Structure visualization
- 3D map visualization and processing
Contact: Prof. Dr. Benoît Zuber
CellProfiler
CellProfiler
- Quantitative analysis of biological images, particularly in high-throughput experiments
- Modular, flexible, with easy point-and-click graphical user interface
- With capability to make use of clusters of computers when available
Contact: Dr. Maciej Dobrzynski